Journal Articles

[Editorial] Preparing for the next Katrina

Science - Thu, 08/27/2015 - 23:00
Ten years ago, Katrina, a category 5 hurricane at peak strength, slammed into New Orleans. Its associated storm surge breached the extensive levee system that had protected the city. Nearly 2000 residents died, and damages exceeded $100 billion. The storm remains the costliest natural disaster in U.S. history, and the resulting economic, social, and environmental turmoil led to the largest mass migration since the U.S. Civil War. A distinguished panel* of scientists and engineers who had been on the scene of Katrina was convened on the eve of the 10th anniversary of this event to address the question: Are American cities better prepared for the next major hurricane? Author: Marcia McNutt
Categories: Journal Articles

[In Brief] This week's section

Science - Thu, 08/27/2015 - 23:00
In science news around the world, the IS group destroys an ancient temple in Palmyra, Syria, the U.S. Food and Drug Administration approves a "female Viagra" drug, eight protestors are arrested in Hawaii attempting to block construction of the Daniel K. Inouye Solar Telescope, a new quantum processor breaks the "1000-qubit barrier," and more. Also, the National Oceanic and Atmospheric Administration declares the deaths of 30 large whales in the Gulf of Alaska since May an "unusual mortality event," triggering a focused investigation into the cause of the deaths. And Science chats with Jorge Cham, creator of the comic Piled Higher and Deeper (PHD), about his new, upcoming movie.
Categories: Journal Articles

[In Depth] Fiscal crisis has Brazilian scientists scrambling

Science - Thu, 08/27/2015 - 23:00
Brazilian scientists are facing one of the nation's worst funding climates in decades. Battling a slumping economy and debt, Brazil's federal government has taken an ax to spending, and it isn't sparing science. President Dilma Rousseff's administration has cut by 25% the Ministry of Science's projected 2015 budget, and sliced 9% from the budget of the Ministry of Education, which plays an important role in funding graduate students. Research agencies are withholding money for grants that have already been awarded, and have canceled or postponed new calls for proposals. And Rousseff is redirecting funds once earmarked largely for research to send Brazilian students abroad to study. The funding climate is "the worst in 20 years," says Helena Nader, president of the Brazilian Society for the Advancement of Science. At the root of the problem are changes in how Brazil's government spends the royalties generated by Brazil's lucrative offshore oil fields, which have been a major source of funding for science and technology development. In recent years, Brazil's government has redirected much of the oil revenue to other priorities, including health care and education. Author: Herton Escobar
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[In Depth] Many psychology papers fail replication test

Science - Thu, 08/27/2015 - 23:00
The largest effort yet to replicate psychology studies has yielded both good and bad news. On the down side, of the 100 prominent papers analyzed, only 39% could be replicated unambiguously, as a group of 270 researchers describes on page 943. On the up side, despite the sobering results, the effort seems to have drawn little of the animosity that greeted a similar replication effort last year. This time around, even some of the original authors see the replications as a useful addition to their own research. "This is how science works," says Joshua Correll, a psychologist at the University of Colorado, Boulder, and one of the authors whose results could not be replicated. "How else will we converge on the truth? Really, the surprising thing is that this kind of systematic attempt at replication is not more common." That's encouraging news to Brian Nosek, a psychologist at the University of Virginia in Charlottesville who led the mass replication effort, which began in 2011 with the goal of putting psychological science on more rigorous experimental footing. Author: John Bohannon
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[In Depth] Plugged pores may underlie some ALS, dementia cases

Science - Thu, 08/27/2015 - 23:00
It is famous for robbing Lou Gehrig of his life and Stephen Hawking of his mobility and voice, but just how amyotrophic lateral sclerosis (ALS) destroys motor neurons in the brain and spinal cord remains a mystery. Now, scientists are converging on an explanation, at least for a fraction of the ALS cases caused by a mutation also associated with a kind of dementia. In cells with the mutation, the new work shows, pores in the membrane separating the nucleus and cytoplasm become clogged, preventing vital molecules from passing through and creating a fatal cellular traffic jam. For now, the work applies only to the mutation dubbed C9orf72—a DNA stutter in which a short nucleotide sequence, GGGGCC, is repeated hundreds to thousands of times in a gene on chromosome 9. Nor do the multiple labs reporting results this week agree on exactly what plugs those nuclear pores and how the cells die. Still, many in the field are calling the work a major breakthrough, and say the findings could point to new therapies, as well as a novel mechanism for neurodegeneration. Author: Emily Underwood
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[In Depth] Dark horse scores a fusion coup

Science - Thu, 08/27/2015 - 23:00
Nuclear fusion has always required titanic machines and vast amounts of public money—and success is always decades away. Now, a privately funded company has taken what some physicists say is a significant step toward mastering fusion energy with a smaller, cheaper, faster approach. Tri Alpha Energy announced this week that it has built a machine that forms a ball of gas—superheated to about 10 million degrees Celsius—and holds it steady for 5 milliseconds without decaying. Those conditions are well short of what is needed for fusion, but the feat shows for the first time that Tri Alpha's unorthodox approach can trap hot fusion gas in a steady state. Now, the scientists hope to scale up the technique toward times and temperatures that cause atomic nuclei in the gas to fuse together, releasing energy. Author: Daniel Clery
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[In Depth] Orchids' dazzling diversity explained

Science - Thu, 08/27/2015 - 23:00
With more than 25,000 species, orchids are the largest group of plants. A new family tree shows how they owe their diversity to a series of innovations that individually or jointly touched off explosions of new species. The pace of diversification rose after orchids developed a way to lump their pollen into balls called pollinia, which allowed them to exclusively rely on certain insect species for pollination. Many lineages benefited from the evolution of a kind of water-saving photosynthesis. A shift to living in trees opened up many niches, as did a move into tropical mountains such as the Andes. Author: Erik Stokstad
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[Feature] The missing mudbug

Science - Thu, 08/27/2015 - 23:00
In North America, crayfish have diversified into roughly 400 species—two-thirds of the world's total—and live mainly in the southeast. Biologists estimate nearly half of U.S. species are imperiled, whereas about a third of the world's crayfish are. Spurred by growing concerns that pollution, habitat destruction, and other threats are placing many crayfish species in harm's way, federal officials are taking a hard look at whether to give legal protection to two: the Guyandotte River crayfish found in southern West Virginia and the Big Sandy crayfish found in Kentucky, West Virginia, and Virginia. If the listings go through, a broad range of economically important activities that affect the crayfish, including mining, logging, and recreation, could feel an impact. So government officials are proceeding with care, seeking to learn as much as possible about the enigmatic invertebrates before making decisions—and they are asking researchers like West Liberty University's Zachary Loughman for help. Author: Emily DeMarco
Categories: Journal Articles

[Feature] Birth of the moralizing gods

Science - Thu, 08/27/2015 - 23:00
Today's most successful religions have one thing in common: moralizing gods that care about how people treat one another and will punish those who are selfish and cruel. But for most of human history, these "big gods" were the exception. If today's hunter-gatherers are any guide, for thousands of years our ancestors conceived of deities as utterly indifferent to the human realm, and to whether we behaved well or badly. Now, to crack the mystery of why and how people around the world came to believe in moralizing gods, researchers are using a novel tool in religious studies: the scientific method. By combining laboratory experiments, cross-cultural fieldwork, and analysis of the historical record, an interdisciplinary team has proposed that belief in judgmental deities was key to the cooperation needed to build and sustain large, complex societies. And once big gods and big societies existed, their moralizing deities helped religions as dissimilar as Islam and Mormonism to spread by making groups of the faithful more cooperative and therefore more successful. Critics say the big gods team is projecting modern values onto ancient cultures, and that belief in moralizing deities is a byproduct of other social changes. To settle the debate, researchers are looking for quantitative data in novel places, including the historical record. Author: Lizzie Wade
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[Feature] Turning history into a binary code

Science - Thu, 08/27/2015 - 23:00
To test his hypothesis about how moralizing, prosocial religions evolved, University of British Columbia psychologist Ara Norenzayan needs help from the humanities. Did moralizing gods, community-wide rituals, and supernatural punishment emerge before or after societies became politically complex? Has any large-scale society succeeded without prosocial religion? And what does "moralizing" really mean at different times and in difficult cultures? To answer these questions in a rigorous, scientific way, he and his colleagues are trying to convince historians to turn the nuanced knowledge in their heads into the kind of data scientists need: a database's binary code of yes/no answers. By creating the Database of Religious History, the big gods team is attempting to bridge the gulf between humanistic and scientific scholarship—but success hinges on enticing leading historians and religious studies scholars to join them. Author: Lizzie Wade
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[Perspective] Synthetic communities, the sum of parts

Science - Thu, 08/27/2015 - 23:00
Cooperation between cells is one of evolution's fundamental innovations. It allows cells to specialize: Different members of a consortium assume different responsibilities, increasing overall productivity and allowing for more complex behavior than is possible with a single cell or a monoculture (1). These features of natural systems have attracted the attention of synthetic biologists, who have made engineering of cooperation between cells a long-standing goal. On page 986 of this issue, Chen et al. (2) report the creation of a synthetic consortium of cooperating Escherichia coli bacteria. The design principles they demonstrate have important implications for the construction of multicellular synthetic systems. Authors: Brian P. Teague, Ron Weiss
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[Perspective] As simple as [2+2]

Science - Thu, 08/27/2015 - 23:00
Olefin cycloadditions, pericyclic reactions in which the relatively weak π bonds of these unsaturated species are swapped out for stronger σ bonds, are among the most widely exploited transformations in organic synthesis (1). Indeed, the Diels-Alder reaction—a [4π+2π] cycloaddition (a [4+2] cycloaddition for short) that forms six-membered rings from a diene (the 4π component) and an olefin (the 2π component)—has a storied history in the many branches of synthetic chemistry and proceeds readily under thermal conditions (see the figure, panel A) (2). However, a similarly fundamental pericyclic reaction—the corresponding [2+2] cycloaddition of two olefins, leading to cyclobutane rings—usually requires photochemical conditions to proceed efficiently, a fact enforced by the constraints of orbital symmetry (3). On page 960 of this issue, Hoyt et al. (4) report the development of catalysts based on iron that transform simple feedstock olefins into cyclobutanes through [2+2] cycloadditions under mild, thermal conditions. Authors: Myles W. Smith, Phil S. Baran
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[Policy Forum] Safeguarding gene drive experiments in the laboratory

Science - Thu, 08/27/2015 - 23:00
Gene drive systems promote the spread of genetic elements through populations by assuring they are inherited more often than Mendelian segregation would predict (see the figure). Natural examples of gene drive from Drosophila include sex-ratio meiotic drive, segregation distortion, and replicative transposition. Synthetic drive systems based on selective embryonic lethality or homing endonucleases have been described previously in Drosophila melanogaster (1–3), but they are difficult to build or are limited to transgenic populations. In contrast, RNAguided gene drives based on the CRISPR/Cas9 nuclease can, in principle, be constructed by any laboratory capable of making transgenic organisms (4). They have tremendous potential to address global problems in health, agriculture, and conservation, but their capacity to alter wild populations outside the laboratory demands caution (4–7). Just as researchers working with self-propagating pathogens must ensure that these agents do not escape to the outside world, scientists working in the laboratory with gene drive constructs are responsible for keeping them confined (4, 6, 7). Authors: Omar S. Akbari, Hugo J. Bellen, Ethan Bier, Simon L. Bullock, Austin Burt, George M. Church, Kevin R. Cook, Peter Duchek, Owain R. Edwards, Kevin M. Esvelt, Valentino M. Gantz, Kent G. Golic, Scott J. Gratz, Melissa M. Harrison, Keith R. Hayes, Anthony A. James, Thomas C. Kaufman, Juergen Knoblich, Harmit S. Malik, Kathy A. Matthews, Kate M. O'Connor-Giles, Annette L. Parks, Norbert Perrimon, Fillip Port, Steven Russell, Ryu Ueda, Jill Wildonger
Categories: Journal Articles

[Perspective] Microbiota RORgulates intestinal suppressor T cells

Science - Thu, 08/27/2015 - 23:00
The immune system in the intestine is highly adapted to resist invading pathogens while residing peacefully with the abundant and diverse commensal bacteria that colonize the gastrointestinal tract. In turn, bacterial signals shape immunity in the intestine, promoting intestinal homeostasis in part by inducing and expanding specialized regulatory T (Treg) cells that prevent aberrant inflammatory responses to self and environmental stimuli (1). On pages 989 and 993 of this issue, Ohnmacht et al. (2) and Sefik et al. (3), respectively, report the development and function of a subpopulation of Treg cells found primarily in the large intestine, and characterized by expression of the nuclear hormone receptor retinoic acid receptor-related orphan receptor γt (RORγt). This is surprising because RORγt classically promotes the differentiation of T helper 17 (TH17) cells, a population associated with tissue inflammation in many inflammatory diseases (4). Both studies show that microbiota-derived signals induce the expression of RORγt in Treg cells that control intestinal inflammation (see the figure). These findings highlight the diversity of colonic Treg cells, their complex transcriptional programs, and their important role in the intestine. Authors: Ahmed N. Hegazy, Fiona Powrie
Categories: Journal Articles

[Perspective] Defining the genus Homo

Science - Thu, 08/27/2015 - 23:00
Almost 300 years ago, Linnaeus defined our genus Homo (and its species Homo sapiens) with the noncommittal words nosce te ipsum (know thyself) (1). Since then, fossil and molecular biology studies have provided insights into its evolution, yet the boundaries of both the species and the genus remain as fuzzy as ever, new fossils having been rather haphazardly assigned to species of Homo, with minimal attention to details of morphology. Authors: Jeffrey H. Schwartz, Ian Tattersall
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[Book Review] Fact meets fiction

Science - Thu, 08/27/2015 - 23:00
Relying on nearly 70 rare books drawn from 21 library collections, Fantastic Worlds chronicles the era of rapid scientific discovery and innovation that gave birth to the literary genre known as science fiction. Reviewer Rachel Gross revels in the exhibition's juxtaposition of science and fantasy: from Jules Verne's tales of unabashed wonder, to Mary Shelley's haunting story of a scientist who pushes the boundaries of nature and taboo. Author: Rachel Gross
Categories: Journal Articles

[Book Review] The daring doctor

Science - Thu, 08/27/2015 - 23:00
On 10 December 1954, Col. John Stapp shot across the grounds of Holloman Air Force Base on a rocket sled, reaching 639 miles per hour and coming to a complete halt in less than 1.37 seconds. This was not a publicity stunt. Stapp, a biophysicist and medical doctor, was conducting an experiment in the emerging scientific field of biomechanics. In Sonic Wind, author Craig Ryan brings Stapp's death-defying feats to life. Reviewer Lee Vinsel praises the book's smooth prose and Ryan's efforts to humanize Stapp, but questions his portrayal of Stapp as a lone genius. Author: Lee Vinsel
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[Books et al.] Books Received

Science - Thu, 08/27/2015 - 23:00
A listing of books received at Science during the week ending 21 August 2015.
Categories: Journal Articles

[Letter] Gene editing: Advising advice

Science - Thu, 08/27/2015 - 23:00
Authors: Courtney Addison, Samuel Taylor-Alexander
Categories: Journal Articles

[Letter] The wisdom of baboon decisions

Science - Thu, 08/27/2015 - 23:00
Author: K. Brad Wray
Categories: Journal Articles
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