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S

s - Variable in class ec.app.sequence.FTNode
 
SequenceClassificationProblem - Class in ec.app.sequence
Basic Fitness assessment code.
SequenceClassificationProblem() - Constructor for class ec.app.sequence.SequenceClassificationProblem
 
SequenceFeatureGenerator - Class in ec.app.sequence
 
SequenceFeatureGenerator() - Constructor for class ec.app.sequence.SequenceFeatureGenerator
 
setup(EvolutionState, Parameter) - Method in class ec.app.sequence.func.IntegerTerminal
 
setup(String) - Method in class ec.app.sequence.HallOfFame
 
setup(EvolutionState, Parameter) - Method in class ec.app.sequence.SequenceClassificationProblem
 
setup(String) - Method in class ec.app.sequence.SequenceFeatureGenerator
This method reads the sequences from File with labels +1, -1 and tries to put it in right buckets.
setup(EvolutionState, Parameter) - Method in class ec.app.sequence.StatisticPluginForHallofFame
 
setup(String) - Method in class ec.app.sequence.ThreadedSequenceFeatureInterpreter
This method reads the sequences from File with labels +1, -1 and tries to put it in right buckets.
ShiftTerminal1 - Class in ec.app.sequence.func
This is a terminal for getting Shift of 1, correlational features
ShiftTerminal1() - Constructor for class ec.app.sequence.func.ShiftTerminal1
 
ShiftTerminal2 - Class in ec.app.sequence.func
This is a terminal for getting Shift of 1, correlational features
ShiftTerminal2() - Constructor for class ec.app.sequence.func.ShiftTerminal2
 
ShiftTerminal3 - Class in ec.app.sequence.func
This is a terminal for getting Shift of 3, correlational features
ShiftTerminal3() - Constructor for class ec.app.sequence.func.ShiftTerminal3
 
SMALL - Static variable in class ec.app.sequence.SequenceClassificationProblem
The small deviation allowed in double comparisons.
splitEqually(String, String, int) - Static method in class ec.app.sequence.FastaFileChunker
 
StatisticPluginForHallofFame - Class in ec.app.sequence
This class is meant for getting plugin for HallOfFame.
StatisticPluginForHallofFame() - Constructor for class ec.app.sequence.StatisticPluginForHallofFame
 
StringNodeSize1 - Class in ec.app.sequence.func
This generates a random Node of 1 Terminal of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize1() - Constructor for class ec.app.sequence.func.StringNodeSize1
 
StringNodeSize2 - Class in ec.app.sequence.func
This generates a random Node of 2 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize2() - Constructor for class ec.app.sequence.func.StringNodeSize2
 
StringNodeSize3 - Class in ec.app.sequence.func
This generates a random Node of 3 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize3() - Constructor for class ec.app.sequence.func.StringNodeSize3
 
StringNodeSize4 - Class in ec.app.sequence.func
This generates a random Node of 4 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize4() - Constructor for class ec.app.sequence.func.StringNodeSize4
 
StringNodeSize5 - Class in ec.app.sequence.func
This generates a random Node of 5 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize5() - Constructor for class ec.app.sequence.func.StringNodeSize5
 
StringNodeSize6 - Class in ec.app.sequence.func
This generates a random Node of 6 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize6() - Constructor for class ec.app.sequence.func.StringNodeSize6
 
StringNodeSize7 - Class in ec.app.sequence.func
This generates a random Node of 7 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize7() - Constructor for class ec.app.sequence.func.StringNodeSize7
 
StringNodeSize8 - Class in ec.app.sequence.func
This generates a random Node of 8 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize8() - Constructor for class ec.app.sequence.func.StringNodeSize8
 
SubpopulationExt - Class in ec.app.sequence
This class extends Subpopulation and decreases the size of it every time by 25% for example.
SubpopulationExt() - Constructor for class ec.app.sequence.SubpopulationExt
 

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