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Class Summary | |
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ExonParser | This is generic Utility to parse RNA sequences, with exons data given, to find the exact locations of Acceptors and Donors. |
FastaFileChunker | |
FastaParserGenome | This Utility is used to extract Positive and Negative samples from Fasta files which have labels in properties. |
FastaParserGenomeLabelGenerator | |
FeatureCollector | |
FeatureReader | |
FeatureSorter | |
FileUtil | |
FTNode | |
HallOfFame | This is our simple implementation of Hall of Fame to capture good individuals from the run. |
LibSvmToWekaFormatter | |
MotifData | This is the basic evolutionary data bucket sent across and each one puts his results in the bucket. |
RNASequenceParser | |
SequenceClassificationProblem | Basic Fitness assessment code. |
SequenceFeatureGenerator | |
StatisticPluginForHallofFame | This class is meant for getting plugin for HallOfFame. |
SubpopulationExt | This class extends Subpopulation and decreases the size of it every time by 25% for example. |
ThreadedSequenceFeatureInterpreter | This code is meant to read the Features stored in file (hall of fame output) and generate LibSVM specific format files. |
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