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C
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
And
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
ANode
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
BooleanFalseTerminal
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
BooleanTrueTerminal
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
CNode
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
Compositional
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
Correlational
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
GNode
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
IntegerTerminal
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
Not
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
Or
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
Position
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
PositionBased
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
ShiftTerminal1
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
ShiftTerminal2
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
ShiftTerminal3
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
StringNodeSize1
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
StringNodeSize2
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
StringNodeSize3
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
StringNodeSize4
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
StringNodeSize5
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
StringNodeSize6
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
StringNodeSize7
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
StringNodeSize8
checkConstraints(EvolutionState, int, GPIndividual, Parameter)
- Method in class ec.app.sequence.func.
TNode
cleanOnly
- Variable in class ec.app.sequence.
SequenceFeatureGenerator
cleanOnly
- Variable in class ec.app.sequence.
ThreadedSequenceFeatureInterpreter
cleanse()
- Method in class ec.app.sequence.
FTNode
close()
- Static method in class ec.app.sequence.
FileUtil
close
- Variable in class ec.app.sequence.
MotifData
close()
- Method in class ec.app.sequence.
ThreadedSequenceFeatureInterpreter
CNode
- Class in
ec.app.sequence.func
This represents the Cytosine Node for DNA sequences.
CNode()
- Constructor for class ec.app.sequence.func.
CNode
Compositional
- Class in
ec.app.sequence.func
This function or non-terminal is used for Compositional Based matching, i.e indepndent of position testing for compositions like AGGG anywhere in the sequence.
Compositional()
- Constructor for class ec.app.sequence.func.
Compositional
copyNode(FTNode, FTNode)
- Method in class ec.app.sequence.
FTNode
copyTo(GPData)
- Method in class ec.app.sequence.
MotifData
Correlational
- Class in
ec.app.sequence.func
This can be used for generating Explicit Correlational Features.
Correlational()
- Constructor for class ec.app.sequence.func.
Correlational
currentMotif
- Variable in class ec.app.sequence.
MotifData
currentMotifLength
- Static variable in class ec.app.sequence.
MotifData
currentPosition
- Variable in class ec.app.sequence.
MotifData
currentTerminal
- Variable in class ec.app.sequence.
MotifData
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