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s
- Variable in class ec.app.sequence.
FTNode
SequenceClassificationProblem
- Class in
ec.app.sequence
Basic Fitness assessment code.
SequenceClassificationProblem()
- Constructor for class ec.app.sequence.
SequenceClassificationProblem
SequenceFeatureGenerator
- Class in
ec.app.sequence
SequenceFeatureGenerator()
- Constructor for class ec.app.sequence.
SequenceFeatureGenerator
setup(EvolutionState, Parameter)
- Method in class ec.app.sequence.func.
IntegerTerminal
setup(String)
- Method in class ec.app.sequence.
HallOfFame
setup(EvolutionState, Parameter)
- Method in class ec.app.sequence.
SequenceClassificationProblem
setup(String)
- Method in class ec.app.sequence.
SequenceFeatureGenerator
This method reads the sequences from File with labels +1, -1 and tries to put it in right buckets.
setup(EvolutionState, Parameter)
- Method in class ec.app.sequence.
StatisticPluginForHallofFame
setup(String)
- Method in class ec.app.sequence.
ThreadedSequenceFeatureInterpreter
This method reads the sequences from File with labels +1, -1 and tries to put it in right buckets.
ShiftTerminal1
- Class in
ec.app.sequence.func
This is a terminal for getting Shift of 1, correlational features
ShiftTerminal1()
- Constructor for class ec.app.sequence.func.
ShiftTerminal1
ShiftTerminal2
- Class in
ec.app.sequence.func
This is a terminal for getting Shift of 1, correlational features
ShiftTerminal2()
- Constructor for class ec.app.sequence.func.
ShiftTerminal2
ShiftTerminal3
- Class in
ec.app.sequence.func
This is a terminal for getting Shift of 3, correlational features
ShiftTerminal3()
- Constructor for class ec.app.sequence.func.
ShiftTerminal3
SMALL
- Static variable in class ec.app.sequence.
SequenceClassificationProblem
The small deviation allowed in double comparisons.
splitEqually(String, String, int)
- Static method in class ec.app.sequence.
FastaFileChunker
StatisticPluginForHallofFame
- Class in
ec.app.sequence
This class is meant for getting plugin for HallOfFame.
StatisticPluginForHallofFame()
- Constructor for class ec.app.sequence.
StatisticPluginForHallofFame
StringNodeSize1
- Class in
ec.app.sequence.func
This generates a random Node of 1 Terminal of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize1()
- Constructor for class ec.app.sequence.func.
StringNodeSize1
StringNodeSize2
- Class in
ec.app.sequence.func
This generates a random Node of 2 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize2()
- Constructor for class ec.app.sequence.func.
StringNodeSize2
StringNodeSize3
- Class in
ec.app.sequence.func
This generates a random Node of 3 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize3()
- Constructor for class ec.app.sequence.func.
StringNodeSize3
StringNodeSize4
- Class in
ec.app.sequence.func
This generates a random Node of 4 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize4()
- Constructor for class ec.app.sequence.func.
StringNodeSize4
StringNodeSize5
- Class in
ec.app.sequence.func
This generates a random Node of 5 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize5()
- Constructor for class ec.app.sequence.func.
StringNodeSize5
StringNodeSize6
- Class in
ec.app.sequence.func
This generates a random Node of 6 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize6()
- Constructor for class ec.app.sequence.func.
StringNodeSize6
StringNodeSize7
- Class in
ec.app.sequence.func
This generates a random Node of 7 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize7()
- Constructor for class ec.app.sequence.func.
StringNodeSize7
StringNodeSize8
- Class in
ec.app.sequence.func
This generates a random Node of 8 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize8()
- Constructor for class ec.app.sequence.func.
StringNodeSize8
SubpopulationExt
- Class in
ec.app.sequence
This class extends Subpopulation and decreases the size of it every time by 25% for example.
SubpopulationExt()
- Constructor for class ec.app.sequence.
SubpopulationExt
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