Package ec.app.sequence.func

Class Summary
And This represents two things, and implicit Correlation if there are two close positonals or explicit correlation between any two things like two positionals not close, one positional and one compositional, one positional , one disjunctive feature etc etc.
ANode This represents the Adenine Node for DNA sequences.
BooleanFalseTerminal Dummy boolean terminal needed for closure in Tree Generation.
BooleanTrueTerminal Dummy boolean terminal needed for closure in Tree Generation.
CNode This represents the Cytosine Node for DNA sequences.
Compositional This function or non-terminal is used for Compositional Based matching, i.e indepndent of position testing for compositions like AGGG anywhere in the sequence.
Correlational This can be used for generating Explicit Correlational Features.
GNode This represents the Guanine Node for DNA sequences.
IntegerTerminal This is an Integer based ERC, for generating Positions.
Not This function or non-terminal is used to do Not/! connection between two Nodes, can be Compositional, Regional, Correlational etc.
Or This function or non-terminal is used to do OR/^ connection between two Nodes, can be Compositional, Regional, Correlational etc.
Position  
PositionBased This function or non-terminal is used for generating "Region" or "Positional" Features.
ShiftTerminal1 This is a terminal for getting Shift of 1, correlational features
ShiftTerminal2 This is a terminal for getting Shift of 1, correlational features
ShiftTerminal3 This is a terminal for getting Shift of 3, correlational features
StringNodeSize1 This generates a random Node of 1 Terminal of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize2 This generates a random Node of 2 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize3 This generates a random Node of 3 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize4 This generates a random Node of 4 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize5 This generates a random Node of 5 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize6 This generates a random Node of 6 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize7 This generates a random Node of 7 Terminals of any combinations of {A,C,T,G} Terminal nodes.
StringNodeSize8 This generates a random Node of 8 Terminals of any combinations of {A,C,T,G} Terminal nodes.
TNode This represents the Thymine Node for DNA sequences.