MLBio+Laboratory Machine Learning in Biomedical Informatics

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In Press

Multi-label Classification using Adaptive Neighborhoods, Saha, Tanwistha, Rangwala Huzefa, and Domeniconi Carlotta , Eleventh International Conference on Machine Learning and Applications (ICMLA), 12/2012, Boca Raton, FL, (In Press)

LSH-Div: Species Diversity Estimation using Locality Sensitive Hashing, Rasheed, Zeehasham, Rangwala Huzefa, and Barbara Daniel , IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 10/2012, Philadelphia, USA, (In Press)

A Map-Reduce Framework for Clustering Metagenomes, Rasheed, Zeehasham, and Rangwala Huzefa , Proceedings of the 12th IEEE International Workshop on High Performance Computational Biology (HiCOMB), 05/2013, Boston, MA, (In Press)

Joint Segmentation and Clustering in Text Corpuses, Blasiak, Sam, Sudarshan Sithu, and Rangwala Huzefa , SIAM International Conference in Data Mining, 04/2013, Austin, TX, (In Press) Abstract

MC-MinH: Metagenome Clustering using Minwise based Hashing, Rasheed, Zeehasham, and Rangwala Huzefa , SIAM International Conference in Data Mining, 04/2013, Austin, TX, (In Press) Abstract

Sparsification and Sampling of Networks for Collective Classification, Saha, Tanwistha, Rangwala Huzefa, and Domeniconi Carlotta , The 2013 International Conference on Social Computing, Behavioral-Cultural Modeling, & Prediction (SBP), 04/2013, Washington, DC, (In Press) Abstract

2013

Modulation of the Metabiome by Rifaximin in Patients with Cirrhosis and Minimal Hepatic Encephalopathy, Bajaj, Jasmohan S., DM Heuman, AJ Sanyal, PB Hylemon, Richard K. Sterling, R. Todd Stravitz Michael Fuchs Jason Ridlon Kalyani Daita Pamela Monteith M., Nicole A. Noble, Melanie B. White Andmorgan Fisher Masoumeh Sikaroodi, Rangwala Huzefa, and Gillevet Patrick , PLoS ONE , Volume 8, Issue 4, (2013)

2012

Multi-task learning for classifying proteins with dual hierarchies., Charuvaka, Anveshi, and Rangwala Huzefa , IEEE International Conference on Data Mining (ICDM), 12/2012, Brussels, Belgium, p.834--839, (2012)

A Family of Feed-forward Models for Protein Sequence Classification, Blasiak, Sam, Rangwala Huzefa, and Laskey Kathryn B. , Proceedings of the European Conference on Machine Learning and Principles of Knowledge Discovery and Data Mining (ECML-PKDD), 09/2012, Number 2, Bristol, UK, p.419--434, (2012)

Transductive multi-label ensemble classification for protein function prediction, Yu, Guoxian, Domeniconi Carlotta, Rangwala Huzefa, Zhang Guoji, and Yu Zhiwen , Proceedings of the 18th ACM SIGKDD international conference on Knowledge discovery and data mining, 08/2012, Beijing, China, p.1077–1085, (2012)

Beam Methods for the Profile Hidden Markov Model, Blasiak, Sam, Rangwala Huzefa, and Laskey Kathryn B. , 2012 SIAM International Conference in Data Mining, 04/2012, Anaheim, CA, p.331-342, (2012)

Efficient Clustering of Metagenomic Sequences using Locality Sensitive Hashing, Rasheed, Zeehasham, Rangwala Huzefa, and Barbara Daniel , SIAM International Conference in Data Mining, 04/2012, Anaheim, CA, p.1023-1034, (2012) Abstract

Colonic microbiome is altered in alcoholism, Mutlu, Ece A., Gillevet Patrick M., Rangwala Huzefa, Sikaroodi Masoumeh, Naqvi Ammar, Engen Phillip A., Kwasny Mary, Lau Cynthia K., and Keshavarzian Ali , American Journal of Physiology - Gastrointestinal and Liver Physiology, (2012) Abstract

Feature Enriched Nonparametric Bayesian Co-clustering, Wang, Pu, Domeniconi Carlotta, Rangwala Huzefa, and Laskey Kathryn B. , PAKDD (1), p.517-529, (2012)

Improving network response times using social information, Hiremagalore, Sharath, Liang Chen, Stavrou Angelos, and Rangwala Huzefa , Social Network Analysis and Mining, p.1-12, (2012) Abstract

Malware Characterization Using Behavioral Components, Yavvari, Chaitanya, Tokhtabayev Arnur G., Rangwala Huzefa, and Stavrou Angelos , MMM-ACNS, St. Petersburg, Russia, p.226-239, (2012)

Metagenomic Taxonomic Classification using Extreme Learning Machines. , Rasheed, Zeehasham, and Rangwala Huzefa , Journal of Bioinformatics and Computational Biology, Volume 10, Number 05, p.1250015, (2012)

Protein function prediction using weak-label learning, Yu, G., Zhang G., Rangwala H., Domeniconi C., and Yu Z. , Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine, p.202–209, (2012)

2011

Detection of Communities and Bridges in Weighted Networks, Saha, Tanwistha, Domeniconi Carlotta, and Rangwala Huzefa , MLDM, p.584-598, (2011)

Evaluation of short read metagenomic assembly., Charuvaka, Anveshi, and Rangwala Huzefa , BMC Genomics, Volume 12 Suppl 2, Computer Science Department, George Mason University, Fairfax, Virginia, USA. rangwala@cs.gmu.edu., p.S8, (2011) Abstract

GPU-Euler: Sequence Assembly Using GPGPU, Mahmood, Syed Faraz, and Rangwala Huzefa , HPCC, p.153-160, (2011)

A Hidden Markov Model Variant for Sequence Classification, Blasiak, Sam, and Rangwala Huzefa , IJCAI, p.1192-1197, (2011)

An Information Theoretic Approach for the Analysis of RNA and DNA Binding Sites, Li, Sheng, and Rangwala Huzefa , BICoB, p.184-189, (2011)

Predicting Network Response Times Using Social Information, Liang, Chen, Hiremagalore Sharath, Stavrou Angelos, and Rangwala Huzefa , ASONAM, p.527-531, (2011)

Profiling Microbial Communities using SSU rRNA Sequence and LH-PCR Data, Wisittipanit, Nuttachat, Rangwala Huzefa, Sikaroodi Masoumeh, Keshavarzian Ali, Mutlu Ece A., and Gillevet Patrick , BICoB, p.190-195, (2011)