Publications

Mayer BW, Rangwala HS, Gupta R, et al. "Feature mining for prediction of degree of liver fibrosis." AMIA Annu Symp Proc. 2005:1048.

Rangwala H, Karypis G. "Profile-based direct kernels for remote homology detection and fold recognition." Bioinformatics. 2005;21:4239-4247. Abstract

Rangwala H, Karypis G. "Building multiclass classifiers for remote homology detection and fold recognition." BMC Bioinformatics. 2006;7:455. Abstract

Rangwala H, Karypis G. "fRMSDPred: predicting local RMSD between structural fragments using sequence information." Comput Syst Bioinformatics Conf. 2007;6:311-322. Abstract

Rangwala H, Karypis G. "Incremental window-based protein sequence alignment algorithms." Bioinformatics. 2007;23:e17-23. Abstract

Rangwala H, DeRonne K, Karypis G. "Knowledge Discovery in Bioinformatics: Techniques, Methods, and Applications." In: Hu X, Pan Y, eds. Knowledge Discovery in Bioinformatics. John Wiley & Sons, Inc.; 2007:.

Rangwala H, Karypis G. "fRMSDAlign: Protein Sequence Alignment Using Predicted Local Structure Information for Pairs with Low Sequence Identity.". In: APBC.; 2008:.

Rangwala H, Karypis G. "fRMSDPred: predicting local RMSD between structural fragments using sequence information." Proteins. 2008;72:1005-1018. Abstract

Zhang R, Rangwala H, Karypis G. "Genome Alignments Using MPI-LAGAN.". In: BIBM.; 2008:.

Kauffman C, Rangwala H, Karypis G. "Improving homology models for protein-ligand binding sites." Comput Syst Bioinformatics Conf. 2008;7:211-222. Abstract

Ahmed R, Rangwala H, Karypis G. "TOPTMH: Topology Predictor for Transmembrane alpha-Helices.". In: ECML/PKDD (1).; 2008:. Abstract

Rangwala H, Karypis G. "Biological Data Mining." In: Chen J, Lonardi S, eds. CRC Press; 2009.

Rangwala H, Kauffman C, Karypis G. "A Kernel Framework for Protein Residue Annotation.". In: PAKDD.; 2009:. Abstract

Ning X, Rangwala H, Karypis G. "Multi-assay-based structure-activity relationship models: improving structure-activity relationship models by incorporating activity information from related targets." J Chem Inf Model. 2009;49:2444-2456. Abstract

Rangwala H, Kauffman C, Karypis G. "svmPRAT: SVM-based protein residue annotation toolkit." BMC Bioinformatics. 2009;10:439. Abstract

Rangwala H, Karypis G. Introduction to protein structure prediction : methods and algorithms. Vol. 14. Hoboken, N.J.: Wiley; 2010. Wiley series on bioinformatics 14. Abstract

Rangwala H, Karypis G. "Introduction to Protein Structure Prediction: Methods and Algorithms." In: Rangwala H, Karypis G, eds. Wiley; 2010:.

Rangwala H. "Introduction to Protein Structure Prediction: Methods and Algorithms." In: Rangwala H, Karypis G, eds. Wiley; 2010:.

Charaniya S, Le H, Rangwala H, et al. "Mining manufacturing data for discovery of high productivity process characteristics." J Biotechnol. 2010;147:186-197. Abstract

Naqvi A, Rangwala H, Keshavarzian A, Gillevet P. "Network-based modeling of the human gut microbiome." Chem Biodivers. 2010;7:1040-1050. Abstract

Wisittipanit N, Rangwala H, Gillevet P, Sikaroodi M, Mutlu EA, Keshavarzian A. "SVM-based classification and feature selection methods for the analysis of Inflammatory Bowel disease microbiome data." In: Huan J, Chen J, Zaki M, eds. Proceedings of the 9th International Workshop on Data Mining in Bioinformatics.; 2010:.

Ahmed R, Rangwala H, Karypis G. "TOPTMH: topology predictor for transmembrane alpha-helices." J Bioinform Comput Biol. 2010;8:39-57. Abstract

Wisittipanit N, Rangwala H, Sikaroodi M, Keshavarzian A, Mutlu EA, Gillevet P. "Profiling Microbial Communities using SSU rRNA Sequence and LH-PCR Data.". In: BICoB.; 2011:.

Dixon E, Clubb C, Pittman S, et al. "Solid-phase microextraction and the human fecal VOC metabolome." PLoS One. 2011;6:e18471. Abstract

Mutlu EA, Gillevet PM, Rangwala H, et al. "Colonic microbiome is altered in alcoholism." American Journal of Physiology - Gastrointestinal and Liver Physiology. 2012. Abstract

Download: Liver Physiol-2012ajpgi.pdf (462.89 KB)

Yavvari C, Tokhtabayev AG, Rangwala H, Stavrou A. "Malware Characterization Using Behavioral Components." In: Kotenko IV, Skormin VA, eds. MMM-ACNS. St. Petersburg, Russia; 2012:.

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