Publications
Filters: Author is Huzefa Rangwala [Clear All Filters]
Massively parallel BLAST for the Blue Gene/L,
, In High Availability and Performance Computing Workshop, (2005)
Profile-based direct kernels for remote homology detection and fold recognition.,
, Bioinformatics, Volume 21, Number 23, Department of Computer Science and Engineering, University of Minnesota Minneapolis, MN 55455, USA., p.4239–4247, (2005)
Abstract
Building multiclass classifiers for remote homology detection and fold recognition.,
, BMC Bioinformatics, Volume 7, Department of Computer Science & Engineering, University of Minnesota, Minneapolis, Minnesota, USA. rangwala@cs.umn.edu, p.455, (2006)
Abstract
fRMSDPred: predicting local RMSD between structural fragments using sequence information.,
, Comput Syst Bioinformatics Conf, Volume 6, Computer Science & Engineering, University of Minnesota, Minneapolis, MN 55455, USA. rangwala@cs.umn.edu, p.311–322, (2007)
Abstract
Incremental window-based protein sequence alignment algorithms.,
, Bioinformatics, Volume 23, Number 2, Department of Computer Science & Engineering, University of Minnesota Minneapolis, MN 55455, USA. rangwala@cs.umn.edu, p.e17-23, (2007)
Abstract
Knowledge Discovery in Bioinformatics: Techniques, Methods, and Applications,
, Knowledge Discovery in Bioinformatics, p.145–168, (2007)
fRMSDPred: predicting local RMSD between structural fragments using sequence information.,
, Proteins, Volume 72, Number 3, Computer Science and Engineering, University of Minnesota, Minneapolis, Minnesota 55455, USA. rangwala@cs.umn.edu, p.1005–1018, (2008)
Abstract
Genome Alignments Using MPI-LAGAN,
, BIBM, p.437-440, (2008)
Improving homology models for protein-ligand binding sites.,
, Comput Syst Bioinformatics Conf, Volume 7, Department of Computer Science, University of Minnesota, 117 Pleasant St SE, Room 464, Minneapolis, MN 55455, USA. kauffman@cs.umn.edu, p.211–222, (2008)
Abstract
TOPTMH: Topology Predictor for Transmembrane alpha-Helices,
, ECML/PKDD (1), p.23-38, (2008)
Abstract
Biological Data Mining,
, (2009)
Digging Digg: Comment Mining, Popularity Prediction, and Social Network Analysis,
, Web Information Systems and Mining, International Conference on, Los Alamitos, CA, USA, p.32-38, (2009)
A Kernel Framework for Protein Residue Annotation,
, PAKDD, p.439-451, (2009)
Abstract
Multi-assay-based structure-activity relationship models: improving structure-activity relationship models by incorporating activity information from related targets.,
, J Chem Inf Model, Volume 49, Number 11, Department of Computer Science and Computer Engineering, University of Minnesota, 4-192 EE/CS Building, 200 Union Street SE, Minneapolis, Minnesota 55455, USA. xning@cs.umn.edu, p.2444–2456, (2009)
Abstract
svmPRAT: SVM-based protein residue annotation toolkit.,
, BMC Bioinformatics, Volume 10, Computer Science Department, George Mason University, Fairfax, VA, USA. rangwala@cs.gmu.edu, p.439, (2009)
Abstract
Analysis of multitag pyrosequence data from human cervical lavage samples.,
, Chem Biodivers, Volume 7, Number 5, Microbiome Analysis Center, Manassas, VA 20110, USA., p.1076–1085, (2010)
Abstract
Co-Participation Networks Using Comment Information,
, ICWSM, (2010)
Defining a Coparticipation Network Using Comments on Digg,
, IEEE Intelligent Systems, Volume 25, Number 4, p.36-45, (2010)
Evaluation of short read metagenomic assembly,
, BIBM, p.171-178, (2010)
Introduction to protein structure prediction : methods and algorithms,
, Volume 14, Hoboken, N.J., (2010)
Abstract
Introduction to Protein Structure Prediction: Methods and Algorithms,
, p.1–14, (2010)
Introduction to Protein Structure Prediction: Methods and Algorithms,
, p.165–194, (2010)
Mining manufacturing data for discovery of high productivity process characteristics.,
, J Biotechnol, Volume 147, Number 3-4, Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Avenue SE, Minneapolis, MN 55455-0132, USA., p.186–197, (2010)
Abstract
Multiple Kernel Learning for Fold Recognition,
, BICoB, p.7-12, (2010)
