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convolutional neural networks
A Family of Feed-forward Models for Protein Sequence Classification, Blasiak, Sam, Rangwala Huzefa, and Laskey Kathryn B. , Proceedings of the European Conference on Machine Learning and Principles of Knowledge Discovery and Data Mining (ECML-PKDD), 09/2012, Number 2, Bristol, UK, p.419--434, (2012)
Computing Methodologies
Profile-based direct kernels for remote homology detection and fold recognition., Rangwala, Huzefa, and Karypis George , Bioinformatics, Volume 21, Number 23, Department of Computer Science and Engineering, University of Minnesota Minneapolis, MN 55455, USA., p.4239–4247, (2005) Abstract
Computer-Assisted
Feature mining for prediction of degree of liver fibrosis., Mayer, Benjamin W., Rangwala Huzefa S., Gupta Rohit, Srivastava Jaideep, Karypis George, Kumar Vipin, and de Groen Piet C. , AMIA Annu Symp Proc, University of Minnesota, Minneapolis, MN, USA., p.1048, (2005)
Computer Simulation
Improving homology models for protein-ligand binding sites., Kauffman, Chris, Rangwala Huzefa, and Karypis George , Comput Syst Bioinformatics Conf, Volume 7, Department of Computer Science, University of Minnesota, 117 Pleasant St SE, Room 464, Minneapolis, MN 55455, USA. kauffman@cs.umn.edu, p.211–222, (2008) Abstract
fRMSDPred: predicting local RMSD between structural fragments using sequence information., Rangwala, Huzefa, and Karypis George , Comput Syst Bioinformatics Conf, Volume 6, Computer Science & Engineering, University of Minnesota, Minneapolis, MN 55455, USA. rangwala@cs.umn.edu, p.311–322, (2007) Abstract
Profile-based direct kernels for remote homology detection and fold recognition., Rangwala, Huzefa, and Karypis George , Bioinformatics, Volume 21, Number 23, Department of Computer Science and Engineering, University of Minnesota Minneapolis, MN 55455, USA., p.4239–4247, (2005) Abstract
Computational Biology/*methods
Profile-based direct kernels for remote homology detection and fold recognition., Rangwala, Huzefa, and Karypis George , Bioinformatics, Volume 21, Number 23, Department of Computer Science and Engineering, University of Minnesota Minneapolis, MN 55455, USA., p.4239–4247, (2005) Abstract
Computational Biology
TOPTMH: topology predictor for transmembrane alpha-helices., Ahmed, Rezwan, Rangwala Huzefa, and Karypis George , J Bioinform Comput Biol, Volume 8, Number 1, Department of Computer Science and Engineering, University of Minnesota, Minneapolis, Minnesota 55455, USA. ahmed@cs.umn.edu, p.39–57, (2010) Abstract
Colon/*microbiology
Network-based modeling of the human gut microbiome., Naqvi, Ammar, Rangwala Huzefa, Keshavarzian Ali, and Gillevet Patrick , Chem Biodivers, Volume 7, Number 5, Microbiome Analysis Center, Manassas, VA 20110, USA., p.1040–1050, (2010) Abstract
clustering
Efficient Clustering of Metagenomic Sequences using Locality Sensitive Hashing, Rasheed, Zeehasham, Rangwala Huzefa, and Barbara Daniel , SIAM International Conference in Data Mining, 04/2012, Anaheim, CA, p.1023-1034, (2012) Abstract
Cluster Analysis
Mining manufacturing data for discovery of high productivity process characteristics., Charaniya, Salim, Le Huong, Rangwala Huzefa, Mills Keri, Johnson Kevin, Karypis George, and Hu Wei-Shou , J Biotechnol, Volume 147, Number 3-4, Department of Chemical Engineering and Materials Science, University of Minnesota, 421 Washington Avenue SE, Minneapolis, MN 55455-0132, USA., p.186–197, (2010) Abstract
Profile-based direct kernels for remote homology detection and fold recognition., Rangwala, Huzefa, and Karypis George , Bioinformatics, Volume 21, Number 23, Department of Computer Science and Engineering, University of Minnesota Minneapolis, MN 55455, USA., p.4239–4247, (2005) Abstract
Analysis of multitag pyrosequence data from human cervical lavage samples., Naqvi, Ammar, Rangwala Huzefa, Spear Greg, and Gillevet Patrick , Chem Biodivers, Volume 7, Number 5, Microbiome Analysis Center, Manassas, VA 20110, USA., p.1076–1085, (2010) Abstract
Clinical
Feature mining for prediction of degree of liver fibrosis., Mayer, Benjamin W., Rangwala Huzefa S., Gupta Rohit, Srivastava Jaideep, Karypis George, Kumar Vipin, and de Groen Piet C. , AMIA Annu Symp Proc, University of Minnesota, Minneapolis, MN, USA., p.1048, (2005)
Chemical
fRMSDPred: predicting local RMSD between structural fragments using sequence information., Rangwala, Huzefa, and Karypis George , Comput Syst Bioinformatics Conf, Volume 6, Computer Science & Engineering, University of Minnesota, Minneapolis, MN 55455, USA. rangwala@cs.umn.edu, p.311–322, (2007) Abstract
Multi-assay-based structure-activity relationship models: improving structure-activity relationship models by incorporating activity information from related targets., Ning, Xia, Rangwala Huzefa, and Karypis George , J Chem Inf Model, Volume 49, Number 11, Department of Computer Science and Computer Engineering, University of Minnesota, 4-192 EE/CS Building, 200 Union Street SE, Minneapolis, Minnesota 55455, USA. xning@cs.umn.edu, p.2444–2456, (2009) Abstract
Improving homology models for protein-ligand binding sites., Kauffman, Chris, Rangwala Huzefa, and Karypis George , Comput Syst Bioinformatics Conf, Volume 7, Department of Computer Science, University of Minnesota, 117 Pleasant St SE, Room 464, Minneapolis, MN 55455, USA. kauffman@cs.umn.edu, p.211–222, (2008) Abstract
Cervix Uteri
Analysis of multitag pyrosequence data from human cervical lavage samples., Naqvi, Ammar, Rangwala Huzefa, Spear Greg, and Gillevet Patrick , Chem Biodivers, Volume 7, Number 5, Microbiome Analysis Center, Manassas, VA 20110, USA., p.1076–1085, (2010) Abstract
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