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Proteins/*chemistry/*ultrastructure
Kauffman C, Rangwala H, Karypis G. "Improving homology models for protein-ligand binding sites." Comput Syst Bioinformatics Conf. 2008;7:211-222. Abstract
Rangwala H, Karypis G. "fRMSDPred: predicting local RMSD between structural fragments using sequence information." Comput Syst Bioinformatics Conf. 2007;6:311-322. Abstract
Proteins/*chemistry/*classification
Rangwala H, Karypis G. "Building multiclass classifiers for remote homology detection and fold recognition." BMC Bioinformatics. 2006;7:455. Abstract
Proteins/*chemistry
Rangwala H, Karypis G. "Incremental window-based protein sequence alignment algorithms." Bioinformatics. 2007;23:e17-23. Abstract
Rangwala H, Kauffman C, Karypis G. "svmPRAT: SVM-based protein residue annotation toolkit." BMC Bioinformatics. 2009;10:439. Abstract
Rangwala H, Karypis G. "fRMSDPred: predicting local RMSD between structural fragments using sequence information." Proteins. 2008;72:1005-1018. Abstract
Proteins
Rangwala H, Karypis G. "Profile-based direct kernels for remote homology detection and fold recognition." Bioinformatics. 2005;21:4239-4247. Abstract
Protein/methods
Rangwala H, Karypis G. "Profile-based direct kernels for remote homology detection and fold recognition." Bioinformatics. 2005;21:4239-4247. Abstract
Protein/*methods
Kauffman C, Rangwala H, Karypis G. "Improving homology models for protein-ligand binding sites." Comput Syst Bioinformatics Conf. 2008;7:211-222. Abstract
Rangwala H, Karypis G. "fRMSDPred: predicting local RMSD between structural fragments using sequence information." Comput Syst Bioinformatics Conf. 2007;6:311-322. Abstract
Rangwala H, Karypis G. "Incremental window-based protein sequence alignment algorithms." Bioinformatics. 2007;23:e17-23. Abstract
Rangwala H, Kauffman C, Karypis G. "svmPRAT: SVM-based protein residue annotation toolkit." BMC Bioinformatics. 2009;10:439. Abstract
Protein/*classification
Rangwala H, Karypis G. "Building multiclass classifiers for remote homology detection and fold recognition." BMC Bioinformatics. 2006;7:455. Abstract
protein structure prediction using string kernels
Rangwala H, DeRonne K, Karypis G. "Knowledge Discovery in Bioinformatics: Techniques, Methods, and Applications." In: Hu X, Pan Y, eds. Knowledge Discovery in Bioinformatics. John Wiley & Sons, Inc.; 2007:.
Protein Structure
Kauffman C, Rangwala H, Karypis G. "Improving homology models for protein-ligand binding sites." Comput Syst Bioinformatics Conf. 2008;7:211-222. Abstract
Rangwala H, Karypis G. "Building multiclass classifiers for remote homology detection and fold recognition." BMC Bioinformatics. 2006;7:455. Abstract
Rangwala H, Kauffman C, Karypis G. "svmPRAT: SVM-based protein residue annotation toolkit." BMC Bioinformatics. 2009;10:439. Abstract
protein function prediction
Yu G, Domeniconi C, Rangwala H, Zhang G, Yu Z. "Transductive multi-label ensemble classification for protein function prediction.". In: Proceedings of the 18th ACM SIGKDD international conference on Knowledge discovery and data mining. Beijing, China: ACM; 2012:. KDD '12. Download: p1077-yu.pdf (557.57 KB)
Protein Folding
Rangwala H, Karypis G. "fRMSDPred: predicting local RMSD between structural fragments using sequence information." Comput Syst Bioinformatics Conf. 2007;6:311-322. Abstract
Rangwala H, Karypis G. "Profile-based direct kernels for remote homology detection and fold recognition." Bioinformatics. 2005;21:4239-4247. Abstract
Rangwala H, Kauffman C, Karypis G. "svmPRAT: SVM-based protein residue annotation toolkit." BMC Bioinformatics. 2009;10:439. Abstract
Protein Conformation
Kauffman C, Rangwala H, Karypis G. "Improving homology models for protein-ligand binding sites." Comput Syst Bioinformatics Conf. 2008;7:211-222. Abstract
Rangwala H, Karypis G. "fRMSDPred: predicting local RMSD between structural fragments using sequence information." Comput Syst Bioinformatics Conf. 2007;6:311-322. Abstract
Rangwala H, Karypis G. "Profile-based direct kernels for remote homology detection and fold recognition." Bioinformatics. 2005;21:4239-4247. Abstract
Protein Binding
Kauffman C, Rangwala H, Karypis G. "Improving homology models for protein-ligand binding sites." Comput Syst Bioinformatics Conf. 2008;7:211-222. Abstract
Protein
Rangwala H, Karypis G. "fRMSDPred: predicting local RMSD between structural fragments using sequence information." Proteins. 2008;72:1005-1018. Abstract
Rangwala H, Karypis G. "Profile-based direct kernels for remote homology detection and fold recognition." Bioinformatics. 2005;21:4239-4247. Abstract
Ahmed R, Rangwala H, Karypis G. "TOPTMH: topology predictor for transmembrane alpha-helices." J Bioinform Comput Biol. 2010;8:39-57. Abstract
Rangwala H, Kauffman C, Karypis G. "svmPRAT: SVM-based protein residue annotation toolkit." BMC Bioinformatics. 2009;10:439. Abstract
Peptide Fragments/*chemistry
Rangwala H, Karypis G. "fRMSDPred: predicting local RMSD between structural fragments using sequence information." Comput Syst Bioinformatics Conf. 2007;6:311-322. Abstract
Pattern Recognition
Rangwala H, Kauffman C, Karypis G. "svmPRAT: SVM-based protein residue annotation toolkit." BMC Bioinformatics. 2009;10:439. Abstract
Rangwala H, Karypis G. "Profile-based direct kernels for remote homology detection and fold recognition." Bioinformatics. 2005;21:4239-4247. Abstract
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