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Surface Properties
Rangwala H, Karypis G. "fRMSDPred: predicting local RMSD between structural fragments using sequence information." Comput Syst Bioinformatics Conf. 2007;6:311-322. Abstract
Structure-Activity Relationship
Ning X, Rangwala H, Karypis G. "Multi-assay-based structure-activity relationship models: improving structure-activity relationship models by incorporating activity information from related targets." J Chem Inf Model. 2009;49:2444-2456. Abstract
Sterilization
Dixon E, Clubb C, Pittman S, et al. "Solid-phase microextraction and the human fecal VOC metabolome." PLoS One. 2011;6:e18471. Abstract
Statistical
Rangwala H, Karypis G. "fRMSDPred: predicting local RMSD between structural fragments using sequence information." Comput Syst Bioinformatics Conf. 2007;6:311-322. Abstract
Rangwala H, Karypis G. "Profile-based direct kernels for remote homology detection and fold recognition." Bioinformatics. 2005;21:4239-4247. Abstract
Solid Phase Microextraction/*methods
Dixon E, Clubb C, Pittman S, et al. "Solid-phase microextraction and the human fecal VOC metabolome." PLoS One. 2011;6:e18471. Abstract
Software
Rangwala H, Karypis G. "Profile-based direct kernels for remote homology detection and fold recognition." Bioinformatics. 2005;21:4239-4247. Abstract
Sequence Homology
Kauffman C, Rangwala H, Karypis G. "Improving homology models for protein-ligand binding sites." Comput Syst Bioinformatics Conf. 2008;7:211-222. Abstract
sequence classification
Blasiak S, Rangwala H, Laskey KB. "A Family of Feed-forward Models for Protein Sequence Classification.". In: Proceedings of the European Conference on Machine Learning and Principles of Knowledge Discovery and Data Mining (ECML-PKDD). Bristol, UK: ECML; 2012:. Download: ecml2012.pdf (450.15 KB)
Sequence Analysis
Rangwala H, Karypis G. "Building multiclass classifiers for remote homology detection and fold recognition." BMC Bioinformatics. 2006;7:455. Abstract
Rangwala H, Kauffman C, Karypis G. "svmPRAT: SVM-based protein residue annotation toolkit." BMC Bioinformatics. 2009;10:439. Abstract
Rangwala H, Karypis G. "Profile-based direct kernels for remote homology detection and fold recognition." Bioinformatics. 2005;21:4239-4247. Abstract
Kauffman C, Rangwala H, Karypis G. "Improving homology models for protein-ligand binding sites." Comput Syst Bioinformatics Conf. 2008;7:211-222. Abstract
Rangwala H, Karypis G. "fRMSDPred: predicting local RMSD between structural fragments using sequence information." Comput Syst Bioinformatics Conf. 2007;6:311-322. Abstract
Rangwala H, Karypis G. "Incremental window-based protein sequence alignment algorithms." Bioinformatics. 2007;23:e17-23. Abstract
Sequence Alignment/*methods
Rangwala H, Karypis G. "Incremental window-based protein sequence alignment algorithms." Bioinformatics. 2007;23:e17-23. Abstract
Kauffman C, Rangwala H, Karypis G. "Improving homology models for protein-ligand binding sites." Comput Syst Bioinformatics Conf. 2008;7:211-222. Abstract
Sequence Alignment
Rangwala H, Karypis G. "fRMSDPred: predicting local RMSD between structural fragments using sequence information." Proteins. 2008;72:1005-1018. Abstract
Rangwala H, Karypis G. "Profile-based direct kernels for remote homology detection and fold recognition." Bioinformatics. 2005;21:4239-4247. Abstract
secondary-structure prediction
Rangwala H, DeRonne K, Karypis G. "Knowledge Discovery in Bioinformatics: Techniques, Methods, and Applications." In: Hu X, Pan Y, eds. Knowledge Discovery in Bioinformatics. John Wiley & Sons, Inc.; 2007:.
Secondary
Ahmed R, Rangwala H, Karypis G. "TOPTMH: topology predictor for transmembrane alpha-helices." J Bioinform Comput Biol. 2010;8:39-57. Abstract
Rangwala H, Kauffman C, Karypis G. "svmPRAT: SVM-based protein residue annotation toolkit." BMC Bioinformatics. 2009;10:439. Abstract
Rangwala H, Karypis G. "Building multiclass classifiers for remote homology detection and fold recognition." BMC Bioinformatics. 2006;7:455. Abstract
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