MLBio+Laboratory Machine Learning in Biomedical Informatics

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Book

Introduction to protein structure prediction : methods and algorithms, Rangwala, Huzefa, and Karypis G. , Volume 14, Hoboken, N.J., (2010) Abstract

Book Chapter

Biological Data Mining, Rangwala, Huzefa, and Karypis George , (2009)

Introduction to Protein Structure Prediction: Methods and Algorithms, Rangwala, Huzefa, and Karypis George , p.1–14, (2010)

Introduction to Protein Structure Prediction: Methods and Algorithms, Rangwala, Huzefa , p.165–194, (2010)

Knowledge Discovery in Bioinformatics: Techniques, Methods, and Applications, Rangwala, Huzefa, DeRonne Kevin, and Karypis George , Knowledge Discovery in Bioinformatics, p.145–168, (2007)

Conference Paper

Beam Methods for the Profile Hidden Markov Model, Blasiak, Sam, Rangwala Huzefa, and Laskey Kathryn B. , 2012 SIAM International Conference in Data Mining, 04/2012, Anaheim, CA, p.331-342, (2012)

Co-Participation Networks Using Comment Information, Rangwala, Huzefa, and Jamali Salman , ICWSM, (2010)

Detection of Communities and Bridges in Weighted Networks, Saha, Tanwistha, Domeniconi Carlotta, and Rangwala Huzefa , MLDM, p.584-598, (2011)

Efficient Clustering of Metagenomic Sequences using Locality Sensitive Hashing, Rasheed, Zeehasham, Rangwala Huzefa, and Barbara Daniel , SIAM International Conference in Data Mining, 04/2012, Anaheim, CA, p.1023-1034, (2012) Abstract

Evaluation of short read metagenomic assembly, Charuvaka, Anveshi, and Rangwala Huzefa , BIBM, p.171-178, (2010)

A Family of Feed-forward Models for Protein Sequence Classification, Blasiak, Sam, Rangwala Huzefa, and Laskey Kathryn B. , Proceedings of the European Conference on Machine Learning and Principles of Knowledge Discovery and Data Mining (ECML-PKDD), 09/2012, Number 2, Bristol, UK, p.419--434, (2012)

Feature Enriched Nonparametric Bayesian Co-clustering, Wang, Pu, Domeniconi Carlotta, Rangwala Huzefa, and Laskey Kathryn B. , PAKDD (1), p.517-529, (2012)

fRMSDAlign: Protein Sequence Alignment Using Predicted Local Structure Information for Pairs with Low Sequence Identity, Rangwala, Huzefa, and Karypis George , APBC, p.111-122, (2008)

Genome Alignments Using MPI-LAGAN, Zhang, Ruinan, Rangwala Huzefa, and Karypis George , BIBM, p.437-440, (2008)

GPU-Euler: Sequence Assembly Using GPGPU, Mahmood, Syed Faraz, and Rangwala Huzefa , HPCC, p.153-160, (2011)

A Hidden Markov Model Variant for Sequence Classification, Blasiak, Sam, and Rangwala Huzefa , IJCAI, p.1192-1197, (2011)

An Information Theoretic Approach for the Analysis of RNA and DNA Binding Sites, Li, Sheng, and Rangwala Huzefa , BICoB, p.184-189, (2011)

Joint Segmentation and Clustering in Text Corpuses, Blasiak, Sam, Sudarshan Sithu, and Rangwala Huzefa , SIAM International Conference in Data Mining, 04/2013, Austin, TX, (In Press) Abstract

A Kernel Framework for Protein Residue Annotation, Rangwala, Huzefa, Kauffman Christopher, and Karypis George , PAKDD, p.439-451, (2009) Abstract

LSH-Div: Species Diversity Estimation using Locality Sensitive Hashing, Rasheed, Zeehasham, Rangwala Huzefa, and Barbara Daniel , IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 10/2012, Philadelphia, USA, (In Press)

Malware Characterization Using Behavioral Components, Yavvari, Chaitanya, Tokhtabayev Arnur G., Rangwala Huzefa, and Stavrou Angelos , MMM-ACNS, St. Petersburg, Russia, p.226-239, (2012)

A Map-Reduce Framework for Clustering Metagenomes, Rasheed, Zeehasham, and Rangwala Huzefa , Proceedings of the 12th IEEE International Workshop on High Performance Computational Biology (HiCOMB), 05/2013, Boston, MA, (In Press)

Massively parallel BLAST for the Blue Gene/L, Rangwala, Huzefa, Lantz Eric, Musselman Roy, Pinnow Kurt, Smith Brian, and Wallenfelt Brian , In High Availability and Performance Computing Workshop, (2005)

MC-MinH: Metagenome Clustering using Minwise based Hashing, Rasheed, Zeehasham, and Rangwala Huzefa , SIAM International Conference in Data Mining, 04/2013, Austin, TX, (In Press) Abstract

Multi-label Classification using Adaptive Neighborhoods, Saha, Tanwistha, Rangwala Huzefa, and Domeniconi Carlotta , Eleventh International Conference on Machine Learning and Applications (ICMLA), 12/2012, Boca Raton, FL, (In Press)