Nature Methods
Nanopores: a sequencer in your backpack
Nature Methods 12, 1015 (2015). doi:10.1038/nmeth.3625
Author: Vivien Marx
It's been a long wait for nanopore sequencing technology. Over 1,000 labs are testing the first commercial device and publishing results. Researchers tell Nature Methods about their experiences putting these early instruments through their paces. And more technology is in the works.
Detecting nano-scale protein clustering
Nature Methods 12, 1019 (2015). doi:10.1038/nmeth.3641
Author: David Baddeley
Two approaches for robust, objective segmentation of single-molecule localization data promise better quantitative insights into protein clustering from super-resolution imaging methods.
Focused ion beams in biology
Nature Methods 12, 1021 (2015). doi:10.1038/nmeth.3623
Authors: Kedar Narayan & Sriram Subramaniam
Corrigendum: Reporters for sensitive and quantitative measurement of auxin response
Nature Methods 12, 1098 (2015). doi:10.1038/nmeth1115-1098a
Author: Che-Yang Liao, Wouter Smet, Geraldine Brunoud, Saiko Yoshida, Teva Vernoux & Dolf Weijers
Corrigendum: Bayesian statistics
Nature Methods 12, 1098 (2015). doi:10.1038/nmeth1115-1098b
Author: Jorge López Puga, Martin Krzywinski & Naomi Altman
Corrigendum: Comparative visualization of genotype-phenotype relationships
Nature Methods 12, 1098 (2015). doi:10.1038/nmeth1115-1098c
Author: Gagarine Yaikhom, Hugh Morgan, Duncan Sneddon, Ahmad Retha, Julian Atienza-Herrero, Andrew Blake, James Brown, Armida Di Fenza, Tanja Fiegel, Neil Horner, Natalie Ring, Luis Santos, Henrik Westerberg, Steve D M Brown & Ann-Marie Mallon
Corrigendum: A holidic medium for Drosophila melanogaster
Nature Methods 12, 1098 (2015). doi:10.1038/nmeth1115-1098d
Author: Matthew D W Piper, Eric Blanc, Ricardo Leitão-Gonçalves, Mingyao Yang, Xiaoli He, Nancy J Linford, Matthew P Hoddinott, Corinna Hopfen, George A Soultoukis, Christine Niemeyer, Fiona Kerr, Scott D Pletcher, Carlos Ribeiro & Linda Partridge
DNA library construction using Gibson Assembly®
Nature Methods 12, (2015). doi:10.1038/nmeth.f.384
Authors: Steven Thomas, Nathaniel D Maynard & John Gill
Quantitative analysis tools and correlative imaging applications for N-STORM
Nature Methods 12, (2015). doi:10.1038/nmeth.f.385
Author: Lynne Chang
NGS library preparation for balanced, comprehensive methylome coverage from low-input quantities
Nature Methods 12, (2015). doi:10.1038/nmeth.f.386
Authors: Cassie Schumacher, Laurie Kurihara & Kate Cunningham
Automated live cell imaging of cell migration across a microfluidic-controlled chemoattractant gradient
Nature Methods 12, (2015). doi:10.1038/nmeth.f.387
Authors: Philip Lee, Cindy S Y Chen, Terry Gaige & Paul J Hung
Bayesian cluster identification in single-molecule localization microscopy data
Nature Methods 12, 1072 (2015). doi:10.1038/nmeth.3612
Authors: Patrick Rubin-Delanchy, Garth L Burn, Juliette Griffié, David J Williamson, Nicholas A Heard, Andrew P Cope & Dylan M Owen
Do we need an ethics of self-organizing tissue?
Nature Methods 12, 895 (2015). doi:10.1038/nmeth.3618
Some cells have a remarkable capacity to organize into tissue-like structures in vitro. As methods to enable self-organization improve, ethical aspects of some of these experiments will need to be considered.
The Author File: Zev Gartner
Nature Methods 12, 897 (2015). doi:10.1038/nmeth.3592
Author: Vivien Marx
Creative chemical techniques to better understand tissue self-organization.
Points of Significance: Association, correlation and causation
Nature Methods 12, 899 (2015). doi:10.1038/nmeth.3587
Authors: Naomi Altman & Martin Krzywinski
Widespread nuclease contamination in commonly used oxygen-scavenging systems
Nature Methods 12, 901 (2015). doi:10.1038/nmeth.3588
Authors: Gayan Senavirathne, Jiaquan Liu, Miguel A Lopez, Jeungphill Hanne, Juana Martin-Lopez, Jong-Bong Lee, Kristine E Yoder & Richard Fishel
MetaPhlAn2 for enhanced metagenomic taxonomic profiling
Nature Methods 12, 902 (2015). doi:10.1038/nmeth.3589
Authors: Duy Tin Truong, Eric A Franzosa, Timothy L Tickle, Matthias Scholz, George Weingart, Edoardo Pasolli, Adrian Tett, Curtis Huttenhower & Nicola Segata
Neuroscience: A digital piece of brain
Nature Methods 12, 905 (2015). doi:10.1038/nmeth.3605
Author: Nina Vogt
Developments in automated sample preparation, electron microscopy and data analysis enable in-depth characterization of a chunk of mouse neocortex.
Biochemistry: Cut and paste for RNA structure
Nature Methods 12, 906 (2015). doi:10.1038/nmeth.3606
Author: Rita Strack
Proximity ligation allows for the global resolution of RNA secondary structures.
Chemistry: A fix for formaldehyde fixation
Nature Methods 12, 906 (2015). doi:10.1038/nmeth.3607
Author: Allison Doerr
Researchers use chemistry to solve a nagging problem that has challenged the analysis of RNA from formaldehyde-fixed tissue specimens.