Nature Methods

Syndicate content Nature Methods
Nature Methods is a science methodology journal publishing laboratory techniques and methods papers in the life sciences and areas of chemistry relevant to the life sciences.
Updated: 8 years 21 weeks ago

Nanopores: a sequencer in your backpack

Wed, 10/28/2015 - 23:00

Nature Methods 12, 1015 (2015). doi:10.1038/nmeth.3625

Author: Vivien Marx

It's been a long wait for nanopore sequencing technology. Over 1,000 labs are testing the first commercial device and publishing results. Researchers tell Nature Methods about their experiences putting these early instruments through their paces. And more technology is in the works.

Detecting nano-scale protein clustering

Wed, 10/28/2015 - 23:00

Nature Methods 12, 1019 (2015). doi:10.1038/nmeth.3641

Author: David Baddeley

Two approaches for robust, objective segmentation of single-molecule localization data promise better quantitative insights into protein clustering from super-resolution imaging methods.

Focused ion beams in biology

Wed, 10/28/2015 - 23:00

Nature Methods 12, 1021 (2015). doi:10.1038/nmeth.3623

Authors: Kedar Narayan & Sriram Subramaniam

Corrigendum: Reporters for sensitive and quantitative measurement of auxin response

Wed, 10/28/2015 - 23:00

Nature Methods 12, 1098 (2015). doi:10.1038/nmeth1115-1098a

Author: Che-Yang Liao, Wouter Smet, Geraldine Brunoud, Saiko Yoshida, Teva Vernoux & Dolf Weijers

Corrigendum: Bayesian statistics

Wed, 10/28/2015 - 23:00

Nature Methods 12, 1098 (2015). doi:10.1038/nmeth1115-1098b

Author: Jorge López Puga, Martin Krzywinski & Naomi Altman

Corrigendum: Comparative visualization of genotype-phenotype relationships

Wed, 10/28/2015 - 23:00

Nature Methods 12, 1098 (2015). doi:10.1038/nmeth1115-1098c

Author: Gagarine Yaikhom, Hugh Morgan, Duncan Sneddon, Ahmad Retha, Julian Atienza-Herrero, Andrew Blake, James Brown, Armida Di Fenza, Tanja Fiegel, Neil Horner, Natalie Ring, Luis Santos, Henrik Westerberg, Steve D M Brown & Ann-Marie Mallon

Corrigendum: A holidic medium for Drosophila melanogaster

Wed, 10/28/2015 - 23:00

Nature Methods 12, 1098 (2015). doi:10.1038/nmeth1115-1098d

Author: Matthew D W Piper, Eric Blanc, Ricardo Leitão-Gonçalves, Mingyao Yang, Xiaoli He, Nancy J Linford, Matthew P Hoddinott, Corinna Hopfen, George A Soultoukis, Christine Niemeyer, Fiona Kerr, Scott D Pletcher, Carlos Ribeiro & Linda Partridge

DNA library construction using Gibson Assembly®

Wed, 10/28/2015 - 23:00

Nature Methods 12, (2015). doi:10.1038/nmeth.f.384

Authors: Steven Thomas, Nathaniel D Maynard & John Gill

Quantitative analysis tools and correlative imaging applications for N-STORM

Wed, 10/28/2015 - 23:00

Nature Methods 12, (2015). doi:10.1038/nmeth.f.385

Author: Lynne Chang

NGS library preparation for balanced, comprehensive methylome coverage from low-input quantities

Wed, 10/28/2015 - 23:00

Nature Methods 12, (2015). doi:10.1038/nmeth.f.386

Authors: Cassie Schumacher, Laurie Kurihara & Kate Cunningham

Automated live cell imaging of cell migration across a microfluidic-controlled chemoattractant gradient

Wed, 10/28/2015 - 23:00

Nature Methods 12, (2015). doi:10.1038/nmeth.f.387

Authors: Philip Lee, Cindy S Y Chen, Terry Gaige & Paul J Hung

Bayesian cluster identification in single-molecule localization microscopy data

Sun, 10/04/2015 - 23:00

Nature Methods 12, 1072 (2015). doi:10.1038/nmeth.3612

Authors: Patrick Rubin-Delanchy, Garth L Burn, Juliette Griffié, David J Williamson, Nicholas A Heard, Andrew P Cope & Dylan M Owen

Do we need an ethics of self-organizing tissue?

Mon, 09/28/2015 - 23:00

Nature Methods 12, 895 (2015). doi:10.1038/nmeth.3618

Some cells have a remarkable capacity to organize into tissue-like structures in vitro. As methods to enable self-organization improve, ethical aspects of some of these experiments will need to be considered.

The Author File: Zev Gartner

Mon, 09/28/2015 - 23:00

Nature Methods 12, 897 (2015). doi:10.1038/nmeth.3592

Author: Vivien Marx

Creative chemical techniques to better understand tissue self-organization.

Points of Significance: Association, correlation and causation

Mon, 09/28/2015 - 23:00

Nature Methods 12, 899 (2015). doi:10.1038/nmeth.3587

Authors: Naomi Altman & Martin Krzywinski

Widespread nuclease contamination in commonly used oxygen-scavenging systems

Mon, 09/28/2015 - 23:00

Nature Methods 12, 901 (2015). doi:10.1038/nmeth.3588

Authors: Gayan Senavirathne, Jiaquan Liu, Miguel A Lopez, Jeungphill Hanne, Juana Martin-Lopez, Jong-Bong Lee, Kristine E Yoder & Richard Fishel

MetaPhlAn2 for enhanced metagenomic taxonomic profiling

Mon, 09/28/2015 - 23:00

Nature Methods 12, 902 (2015). doi:10.1038/nmeth.3589

Authors: Duy Tin Truong, Eric A Franzosa, Timothy L Tickle, Matthias Scholz, George Weingart, Edoardo Pasolli, Adrian Tett, Curtis Huttenhower & Nicola Segata

Neuroscience: A digital piece of brain

Mon, 09/28/2015 - 23:00

Nature Methods 12, 905 (2015). doi:10.1038/nmeth.3605

Author: Nina Vogt

Developments in automated sample preparation, electron microscopy and data analysis enable in-depth characterization of a chunk of mouse neocortex.

Biochemistry: Cut and paste for RNA structure

Mon, 09/28/2015 - 23:00

Nature Methods 12, 906 (2015). doi:10.1038/nmeth.3606

Author: Rita Strack

Proximity ligation allows for the global resolution of RNA secondary structures.

Chemistry: A fix for formaldehyde fixation

Mon, 09/28/2015 - 23:00

Nature Methods 12, 906 (2015). doi:10.1038/nmeth.3607

Author: Allison Doerr

Researchers use chemistry to solve a nagging problem that has challenged the analysis of RNA from formaldehyde-fixed tissue specimens.