MLBio+Laboratory Machine Learning in Biomedical Informatics



Publications


In Press
Yu G, Domeniconi C, Rangwala H, Zhang G. "Protein Function Prediction using Dependence Maximization.". In: Proceedings of the European Conference on Machine Learning and Principles of Knowledge Discovery and Data Mining (ECML-PKDD). Prague, CZ: ECML; In Press.
Blasiak S, Rangwala H, Laskey KB. "Relevant Subsequence Detection with Sparse Dictionary Learning.". In: Proceedings of the European Conference on Machine Learning and Principles of Knowledge Discovery and Data Mining (ECML-PKDD). Prague, CZ: ECML; In Press.
Yu G, Rangwala H, Domeniconi C, Zhang G, Zhang Z. "Protein Function Prediction by Integrating Multiple Kernels." 23rd. International Joint Conference on Artificial Intelligence. In Press:1-7.
2013
Rasheed Z, Rangwala H. "A Map-Reduce Framework for Clustering Metagenomes.". In: Proceedings of the 12th IEEE International Workshop on High Performance Computational Biology (HiCOMB). Boston, MA: IEEE; 2013:. Download: HICOMB2013-06.pdf (229.89 KB)
Blasiak S, Sudarshan S, Rangwala H. "Joint Segmentation and Clustering in Text Corpuses.". In: SIAM International Conference in Data Mining. Austin, TX: SIAM; 2013:. Abstract  Download: 217.pdf (1.27 MB)
Rasheed Z, Rangwala H. "MC-MinH: Metagenome Clustering using Minwise based Hashing.". In: SIAM International Conference in Data Mining. Austin, TX: SIAM; 2013:. Abstract  Download: 277.pdf (379.42 KB)
Saha T, Rangwala H, Domeniconi C. "Sparsification and Sampling of Networks for Collective Classification.". In: The 2013 International Conference on Social Computing, Behavioral-Cultural Modeling, & Prediction (SBP). Washington, DC: Springer; 2013:. Abstract  Download: 10.1007_978-3-642-37210-0_32.pdf (217.95 KB)
2012
Saha T, Rangwala H, Domeniconi C. "Multi-label Classification using Adaptive Neighborhoods.". In: Eleventh International Conference on Machine Learning and Applications (ICMLA). Boca Raton, FL: IEEE; 2012:. Download: ICMLA_Rank.pdf (259.52 KB)
Charuvaka A, Rangwala H. "Multi-task learning for classifying proteins with dual hierarchies.". In: IEEE International Conference on Data Mining (ICDM). Brussels, Belgium: IEEE; 2012:. Download: 4905a834.pdf (276.15 KB)
Rasheed Z, Rangwala H, Barbara D. "LSH-Div: Species Diversity Estimation using Locality Sensitive Hashing.". In: IEEE International Conference on Bioinformatics and Biomedicine (BIBM). Philadelphia, USA: IEEE; 2012:. Download: OTU_BIBM2012.pdf (344.53 KB)
Blasiak S, Rangwala H, Laskey KB. "A Family of Feed-forward Models for Protein Sequence Classification.". In: Proceedings of the European Conference on Machine Learning and Principles of Knowledge Discovery and Data Mining (ECML-PKDD). Bristol, UK: ECML; 2012:. Download: ecml2012.pdf (450.15 KB)
Yu G, Domeniconi C, Rangwala H, Zhang G, Yu Z. "Transductive multi-label ensemble classification for protein function prediction.". In: Proceedings of the 18th ACM SIGKDD international conference on Knowledge discovery and data mining. Beijing, China: ACM; 2012:. KDD '12. Download: p1077-yu.pdf (557.57 KB)
Blasiak S, Rangwala H, Laskey KB. "Beam Methods for the Profile Hidden Markov Model.". In: 2012 SIAM International Conference in Data Mining. Anaheim, CA: SIAM; 2012:. Download: sam2012.pdf (1.04 MB)
Rasheed Z, Rangwala H, Barbara D. "Efficient Clustering of Metagenomic Sequences using Locality Sensitive Hashing.". In: SIAM International Conference in Data Mining. Anaheim, CA: SIAM; 2012:. Abstract  Download: mclsh_sdm2012.pdf (604.91 KB)
Mutlu EA, Gillevet PM, Rangwala H, et al. "Colonic microbiome is altered in alcoholism." American Journal of Physiology - Gastrointestinal and Liver Physiology. 2012. Abstract  Download: Liver Physiol-2012ajpgi.pdf (462.89 KB)
Rasheed Z, Rangwala H. "Metagenomic Taxonomic Classification using Extreme Learning Machines. ." Journal of Bioinformatics and Computational Biology. 2012;10:1250015. Download: S0219720012500151.pdf (300.48 KB)
Yu G, Zhang G, Rangwala H, Domeniconi C, Yu Z. "Protein function prediction using weak-label learning.". In: Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM; 2012:.
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