Proceedings of the Natural Academy of Sciences

Proceedings of the National Academy of Sciences RSS feed -- current issue
  • H2 formation in space [Chemistry]
    [Apr 2013]

    Hydrogen formation is a key process for the physics and the chemistry of interstellar clouds. Molecular hydrogen is believed to form on the carbonaceous surface of dust grains, and several mechanisms have been invoked to explain its abundance in different regions of space, from cold interstellar clouds to warm photon-dominated...
    Categories: Journal Articles
  • Five-vertex Archimedean surface tessellation [Chemistry]
    [Apr 2013]

    The tessellation of the Euclidean plane by regular polygons has been contemplated since ancient times and presents intriguing aspects embracing mathematics, art, and crystallography. Significant efforts were devoted to engineer specific 2D interfacial tessellations at the molecular level, but periodic patterns with distinct five-vertex motifs remained elusive. Here, we report...
    Categories: Journal Articles
  • Dynamic interpretation of input concentration [Developmental Biology]
    [Apr 2013]

    Patterning of body parts in multicellular organisms relies on the interpretation of transcription factor (TF) concentrations by genetic networks. To determine the extent by which absolute TF concentration dictates gene expression and morphogenesis programs that ultimately lead to patterns in Drosophila embryos, we manipulate maternally supplied patterning determinants and measure...
    Categories: Journal Articles
  • ApiAP2 factor control of bradyzoite development [Developmental Biology]
    [Apr 2013]

    Cellular differentiation leading to formation of the bradyzoite tissue cyst stage is the underlying cause of chronic toxoplasmosis. Consequently, mechanisms responsible for controlling development in the Toxoplasma intermediate life cycle have long been sought. Here, we identified 15 Toxoplasma mRNAs induced in early bradyzoite development that encode proteins with apicomplexan...
    Categories: Journal Articles
  • grp94 chaperones MesD-LRP6 [Developmental Biology]
    [Apr 2013]

    Increasing evidence points to a role for the protein quality control in the endoplasmic reticulum (ER) in maintaining intestinal homeostasis. However, the specific role for general ER chaperones in this process remains unknown. Herein, we report that a major ER heat shock protein grp94 interacts with MesD, a critical chaperone...
    Categories: Journal Articles
  • Cyclic drainage of the Fennoscandian Ice Sheet [Earth, Atmospheric, and Planetary Sciences]
    [Apr 2013]

    Continental ice sheets are a key component of the Earth’s climate system, but their internal dynamics need to be further studied. Since the last deglaciation, the northern Eurasian Fennoscandian Ice Sheet (FIS) has been connected to the Black Sea (BS) watershed, making this basin a suitable location to investigate former...
    Categories: Journal Articles
  • Rotating liquid metal convection [Earth, Atmospheric, and Planetary Sciences]
    [Apr 2013]

    The magnetic fields of Earth and other planets are generated by turbulent, rotating convection in liquid metal. Liquid metals are peculiar in that they diffuse heat more readily than momentum, quantified by their small Prandtl numbers, . Most analog models of planetary dynamos, however, use moderate fluids, and the systematic...
    Categories: Journal Articles
  • Testing delayed mortality of Chinook salmon [Ecology]
    [Apr 2013]

    Multiple dam passage during seaward migration is thought to reduce the subsequent survival of Snake River Chinook salmon. This hypothesis developed because juvenile Chinook salmon from the Snake River, the Columbia River’s largest tributary, migrate >700 km through eight hydropower dams and have lower adult return rates than downstream populations...
    Categories: Journal Articles
  • Soil food webs are driven by plant diversity [Ecology]
    [Apr 2013]

    Recent metaanalyses suggest biodiversity loss affects the functioning of ecosystems to a similar extent as other global environmental change agents. However, the abundance and functioning of soil organisms have been hypothesized to be much less responsive to such changes, particularly in plant diversity, than aboveground variables, although tests of this...
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  • Environmental controls on plant canopy chemistry [Ecology]
    [Apr 2013]

    Understanding how and why plant communities vary across space has long been a goal of ecology, yet parsing the relative importance of different influences has remained a challenge. Species-specific models are not generalizable, whereas broad plant functional type models lack important detail. Here we consider plant trait patterns at the...
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  • Turbulence spurs larval settlement [Ecology]
    [Apr 2013]

    Marine invertebrates commonly produce larvae that disperse in ocean waters before settling into adult shoreline habitat. Chemical and other seafloor-associated cues often facilitate this latter transition. However, the range of effectiveness of such cues is limited to small spatial scales, creating challenges for larvae in finding suitable sites at which...
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  • Classical subjective expected utility [Economic Sciences]
    [Apr 2013]

    We consider decision makers who know that payoff-relevant observations are generated by a process that belongs to a given class M, as postulated in Wald [Wald A (1950) Statistical Decision Functions (Wiley, New York)]. We incorporate this Waldean piece of objective information within an otherwise subjective setting à la Savage...
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  • Perpendicular flow alignment in microchannels [Engineering]
    [Apr 2013]

    The flow orientation of anisotropic particles through narrow channels is of importance in many fields, ranging from the spinning and molding of fibers to the flow of cells and proteins through thin capillaries. It is commonly assumed that anisotropic particles align parallel to the flow direction. When flowing through narrowed...
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  • Model of vascular sprouting morphogenesis [Engineering]
    [Apr 2013]

    Angiogenesis is a complex morphogenetic process whereby endothelial cells from existing vessels invade as multicellular sprouts to form new vessels. Here, we have engineered a unique organotypic model of angiogenic sprouting and neovessel formation that originates from preformed artificial vessels fully encapsulated within a 3D extracellular matrix. Using this model,...
    Categories: Journal Articles
  • Climate change, wine, and conservation [Environmental Sciences]
    [Apr 2013]

    Climate change is expected to impact ecosystems directly, such as through shifting climatic controls on species ranges, and indirectly, for example through changes in human land use that may result in habitat loss. Shifting patterns of agricultural production in response to climate change have received little attention as a potential...
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  • Methacrylic acid epoxide precursor to isoprene SOA [Environmental Sciences]
    [Apr 2013]

    Isoprene is a substantial contributor to the global secondary organic aerosol (SOA) burden, with implications for public health and the climate system. The mechanism by which isoprene-derived SOA is formed and the influence of environmental conditions, however, remain unclear. We present evidence from controlled smog chamber experiments and field measurements...
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  • Transmitted founder HIV-1 biology [Microbiology]
    [Apr 2013]

    Defining the virus–host interactions responsible for HIV-1 transmission, including the phenotypic requirements of viruses capable of establishing de novo infections, could be important for AIDS vaccine development. Previous analyses have failed to identify phenotypic properties other than chemokine receptor 5 (CCR5) and CD4+ T-cell tropism that are preferentially associated with...
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  • A continuum model for predicting granular flows [Physics]
    [Apr 2013]

    Dense granular materials display a complicated set of flow properties, which differentiate them from ordinary fluids. Despite their ubiquity, no model has been developed that captures or predicts the complexities of granular flow, posing an obstacle in industrial and geophysical applications. Here we propose a 3D constitutive model for well-developed,...
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  • Imaging topological edge states of cold atoms [Physics]
    [Apr 2013]

    Detecting topological order in cold-atom experiments is an ongoing challenge, the resolution of which offers novel perspectives on topological matter. In material systems, unambiguous signatures of topological order exist for topological insulators and quantum Hall devices. In quantum Hall systems, the quantized conductivity and the associated robust propagating edge modes—guaranteed...
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  • Error-tradeoff relations for joint measurements [Physics]
    [Apr 2013]

    Heisenberg’s uncertainty principle is one of the main tenets of quantum theory. Nevertheless, and despite its fundamental importance for our understanding of quantum foundations, there has been some confusion in its interpretation: Although Heisenberg’s first argument was that the measurement of one observable on a quantum state necessarily disturbs another...
    Categories: Journal Articles