Irina Hashmi and Amarda Shehu. A Basin Hopping Algorithm for Protein-protein Docking. IEEE International Conference on Bioinformatics and Biomedicine (IEEE BIBM), pg. 466-469, Philadelphia, PA, 2012 (accpt rate 20.73%).
Multi-task learning for classifying proteins with dual hierarchies., , IEEE International Conference on Data Mining (ICDM), 12/2012, Brussels, Belgium, p.834–839, (2012)
Multi-label Classification using Adaptive Neighborhoods, , Eleventh International Conference on Machine Learning and Applications (ICMLA), 12/2012, Boca Raton, FL, (In Press)
LSH-Div: Species Diversity Estimation using Locality Sensitive Hashing, , IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 10/2012, Philadelphia, USA, (In Press)
Malware Characterization using Behavioral Components, , International Conference on Mathematical Methods, Models and Architectures for Computer Network Security 2012 , 10/2012, St. Petersburg, Russia, (In Press)
Brian Olson and Amarda Shehu. Evolutionary-inspired Probabilistic Search for Enhancing Sampling of Local Minima in the Protein Energy Surface. Proteome Science 2012, 10(Suppl1): S5
A Family of Feed-forward Models for Protein Sequence Classification, , Proceedings of the European Conference on Machine Learning and Principles of Knowledge Discovery and Data Mining (ECML-PKDD), 09/2012, Number 2, Bristol, UK, p.419–434, (2012)
Brian Olson, Kevin Molloy, S.-Farid Hendi, and Amarda Shehu. Guiding Search in the Protein Conformational Space with Structural Profiles. J Bioinf and Comp Biol 2012, 10(3):1242005 (IF 2011: 1.063).
Irina Hashmi, Bahar Aklbal-Delibas, Nurit Haspel, and Amarda Shehu. Guiding Protein Docking with Geometric and Evolutionary Information. J Bioinf and Comp Biol 2012, 10(3): 1242002(IF 2011: 1.063).